By taking a line out from the pier (3)
I believe the answer is:
per
'by' is the definition.
(thesaurus)
I cannot understand how the remainder of the clue works.
Can you help me to learn more?
(Other definitions for per that I've seen before include "For each or every" , "Preposition meaning for each" , "Preposition indicating by means of" , "According to" .)