Crossword Genius

Entire things, say, have gaps (5)

Ross

I believe the answer is:

holes

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'gaps' is the definition.
(I know this)

I can't explain the rest of the clue.

Can you help me to learn more?

(Other definitions for holes that I've seen before include "Scrapes" , "Cavities" , "Empty spaces" , "Openings" , "Apertures" .)

I've seen this clue in The Mirror.
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