Heart, perhaps, that may be stopped in church? (5)
I believe the answer is:
organ
'heart perhaps' is the definition.
(the heart is an example)
I don't understand the remainder of the clue.
Can you help me to learn more?
(Other definitions for organ that I've seen before include "Publication - musical instrument" , "What makes use of full stops" , "Instrument - heart, for example" , "House journal" , "Soft part of the body which has a specific function" .)