Indisposed at sea, when heading out (6)
I believe the answer is:
ailing
'indisposed' is the definition.
('ailing' can be a synonym of 'indisposed')
I can't explain the rest of the clue.
(Other definitions for ailing that I've seen before include "In poor health" , "Infertile" , "feeling sick" , "not doing very well" , "Troubled in mind or body" .)