Its beauty is but skin deep (6)
I believe the answer is:
veneer
'skin deep' is the definition.
'veneer' can be an answer for 'skin' (thesaurus). I am not sure about the 'deep' bit.
I don't understand how the remainder of the clue works.
Can you help me to learn more?
(Other definitions for veneer that I've seen before include "Decorative coating" , "Thin skin on surface" , "Evener (anag.)" , "Superficial appearance" , "Thin wooden facing" .)