Crossword Genius

Jolly Roger’s head case (5)

Ross

I believe the answer is:

skull

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'head case' is the definition.
'skull' can be an answer for 'head' (I've seen this before). I'm not certain of the 'case' bit.

I cannot understand how the remainder of the clue works.

Can you help me to learn more?

(Other definitions for skull that I've seen before include "Pirate flag feature" , "Bony part of head" , "Bony skeleton of the head" , "Head structure" , "Bony frame of head ..." .)

I've seen this clue in the Evening Standard.
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