Marks way by road from Edinburgh to London, north to south (6)
I believe the answer is:
stains
'marks' is the definition.
('stain' can be a synonym of 'mark')
I don't understand how the remainder of the clue works.
Can you help me to learn more?
(Other definitions for stains that I've seen before include "Discolourations on satins" , "Discolorations or blemishes" , "Sullies" , "Discolorations or dirt marks" , "Discolours or dyes wood" .)