Mineral deposited between mushroom's cap and base of toadstool or some other fungus (5)
I believe the answer is:
morel
'fungus' is the definition.
(morel is a kind of fungus)
I don't understand how the remainder of the clue works.
Can you help me to learn more?
(Other definitions for morel that I've seen before include "Type of mushroom" , "Edible fungus" , "One has a cap" , "Edible mushroom" .)