Crossword Genius

Mostly used-up pencil (3)

Ross

I believe the answer is:

nub

(Other definitions for nub that I've seen before include "Core, pith or gist" , "Centre point or core of a matter" , "Gist; small lump" , "Centre, heart" , "Gist - kernel" .)

I've seen this clue in the Universal.
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