Note military practice removing leader in religious establishment (7)
I believe the answer is:
nunnery
'religious establishment' is the definition.
(I've seen this before)
I don't understand how the rest of the clue works.
Can you help me to learn more?
(Other definitions for nunnery that I've seen before include "Hamlet to Ophelia: 'Get thee to a . . . . . . .'" , "sisters' place" , "Female religious house" , "Religious house for females" , "Convent" .)