Raises reptile briefly at the top of the bay in South America (6)
I believe the answer is:
brazil
'in south america' is the definition.
('Brazil' is part of 'south america')
I can't explain the remainder of the clue.
Can you help me to learn more?
(Other definitions for brazil that I've seen before include "Five-time winners of football's World Cup" , "Rio's country" , "Red wood; nut; country" , "Warm hooded jacket" , "Football World Cup holders" .)