The nut in charge (4)
I believe the answer is:
head
I believe this clue is a double definition.
'the nut' is the first definition.
(thesaurus)
'in charge' is the second definition.
(thesaurus)
(Other definitions for head that I've seen before include "Chief; go first" , "River source; promontory" , "Leader; water pressure" , "Person in charge" , "John on board" .)