Crossword Genius

An opening in stone (5)

Ross

I believe the answer is:

agate

'stone' is the definition.
(agate is a type of stone)

'an opening' is the wordplay.
'an' becomes 'a'.
'opening' becomes 'gate' (a gate is an opening or entrance).
'a'+'gate'='AGATE'

'in' is the link.

(Other definitions for agate that I've seen before include "On the way" , "Hard stone with concentric bands of colour" , "Ornamental form of quartz" , "Variety of chalcedony" , "marble" .)

I've seen this clue in The Sun.
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