Baffled microbiologist not exceptionally stoic in a perplexing situation (9)
I believe the answer is:
imbroglio
'situation' is the definition.
(I know that imbroglio is a type of situation)
I don't understand how the rest of the clue works.
Can you help me to learn more?
(Other definitions for imbroglio that I've seen before include "Confused mess" , "Intricate and confusing heap or situation" , "Dilemma" , "massive jam" , "Confused and tangled situation" .)