Only part of the ship is in port! (4)
I believe the answer is:
hull
'port' is the definition.
(I've seen this before)
I don't understand how the rest of the clue works.
Can you help me to learn more?
(Other definitions for hull that I've seen before include "Shell; a port" , "Port ship's body - remove strawberry tops" , "North-eastern port" , "Main body of vessel" , "Shell of boat" .)