Thinks cottage is ramshackle (9)
I believe the answer is:
cogitates
'thinks' is the definition.
('cogitate' can be a synonym of 'think')
'cottage is ramshackle' is the wordplay.
'cottage is' can be anagrammed to 'COGITATES'.
Though, I am not clear how this is indicated.
Can you help me to learn more?
(Other definitions for cogitates that I've seen before include "Thinks deeply" , "Ponders" , "Muses" .)